Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs6459784 chr7:157259994 T/G 7.83E-5 170 39.23 18 22.67 KM Plot
UCEC rs6492846 chr15:39262308 A/G 7.1E-12 174 2.2 31.57 22.2 KM Plot
UCEC rs6496862 chr15:85106999 A/C 4.72E-9 169 1.67 25.12 22.6 KM Plot
UCEC rs6543021 chr2:98318644 G/A 1.11E-16 173 25.67 18.67 2.03 KM Plot
UCEC rs6554349 chr4:57222781 C/A 1.5E-5 174 33.28 21.55 18.88 KM Plot
UCEC rs6554355 chr4:57256391 A/G 0.00013 174 33.28 22.63 19.67 KM Plot
UCEC rs6554356 chr4:57274679 C/T 0.00013 174 33.28 22.63 19.67 KM Plot
UCEC rs6562241 chr13:62696450 C/A 0.000104 170 22.57 22.9 13 KM Plot
UCEC rs6565210 chr16:30837210 A/G 8.85E-9 172 4.5 18.03 22.8 KM Plot
UCEC rs6590 chr11:73373552 C/T 3.05E-7 174 21.55 35.43 4.33 KM Plot
UCEC rs6591407 chr11:56914157 C/A 8.05E-7 173 22.57 26.17 18.47 KM Plot
UCEC rs6591408 chr11:56920315 A/C 2.9E-5 174 18.78 29.5 22.57 KM Plot
UCEC rs6603018 chr15:84721019 A/G 6.59E-11 172 7.95 22.2 22.63 KM Plot
UCEC rs6722147 chr2:180829704 G/A 0.00013 173 13.63 23.33 22.57 KM Plot
UCEC rs6727890 chr2:180832675 T/C 0.000119 173 13.63 22.7 22.57 KM Plot